PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026520
Common NameLOC102579681
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 414aa    MW: 46157.6 Da    PI: 4.9643
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026520genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.5e-31199257259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  PGSC0003DMP400026520 199 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 257
                           699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.787193259IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-31195259IPR003657WRKY domain
SuperFamilySSF1182903.14E-26197259IPR003657WRKY domain
SMARTSM007741.4E-37198258IPR003657WRKY domain
PfamPF031068.4E-26200257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MENNNYQGDL ADIFRGGNNT TSGESSSTNN TVIPIPTLIS DGWQFPYSAS QIEQPTSVQD  60
FGDPFCNLRD PLFHDLDMLQ AAASEDNIIN NNNNNESTNS VFGDSSPSMR KRGNMFSRML  120
QISPTNKLAM SACVVQNNVI GNHDDINSSK TCLMENSALQ ISSPRNTGIK RRKSQAKKVV  180
CIPAAAPANS RQGGEVVPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR  240
TDPNMLVITY TSEHNHPWPT QRNALAGSTR SQPNNSKHTN NTIIPNNPQS QTDTDEQKET  300
TNNISEYPKV KEEVAEEDVR HNHQLVEMRD DEEFSKDSYQ PIMLPDSSNQ CHEDFFADLI  360
ELEADPLNLL FAKTLSGDIN ELGQKKDIES FNMYDWSKDG NTTTSNNNNN PDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-171972591374WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359101.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLM1B7Q50.0M1B7Q5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000390610.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-81WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]